This screener sifts through RNA sequences and scores their similitude to the G4 folding sequences of G4RNA database via G4NN score. It includes previous scoring system such as G4Hunter and the cG/cC score. https://www.ncbi.nlm.nih.gov/pubmed/29036425

G4RNA Screener development repository provides the code used to train and test G4NN. It contains G4RNA screener's production repository and acts as a wrapper.

Investigating the missing IDs from the HGNC custom download section

A simple RNA-seq pipeline to study the effect of resistance to colorectal cancer treatments on gene expression

c++ gtf parser to get all the attributes of a gtf in columns

Snakemake workflow to download the TGIRT-Seq datasets from GEO and analyze them using a custom pipeline. Tested with Snakemake v.5.7.4.

Modified scripts from https://github.com/qczhang/paris for RNA-RNA interactions analysis

CoCo: Count Corrector for nested genes and multi-mapped reads.

CoCo: Count Corrector for nested genes and multi-mapped reads.

Empty to use its wiki as the group's wiki.

Template for a snakemake project, including support for a Slurm cluster.

snoGloBe is a gradient boosting machine for the prediction of both canonical and non-canonical box C/D snoRNA-RNA interactions