Issue #2

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J-Michel/g4rna_screener#2
Created by Jean-Michel Garant

Reported fasta input issues

  • Exceptions for empty line in a fasta file

As of v0.3 on 19/02/2019, a fasta entry containing a description line (ID) and an empty sequence will return the usage line. If the --error argument is provided, a division by zero error when calculating the G4Hunter score.

  • Support for negative start site

Some prokaryotic genes have a negative value as starting site when the gene overlaps the origin of replication. G4RNA screener does not support negative values and somehow drops both start and end values and deletes them from the description of the fasta entry (ID)

Assignee: Jean-Michel Garant
Milestone: None
1 participant